Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.

TitleGenetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.
Publication TypePublication
Year2019
AuthorsSakornsakolpat P, Prokopenko D, Lamontagne M, Reeve NF, Guyatt AL, Jackson VE, Shrine N, Qiao D, Bartz TM, Kim DKyeom, Lee MKyeong, Latourelle JC, Li X, Morrow JD, Obeidat M'en, Wyss AB, Bakke P, R Barr G, Beaty TH, Belinsky SA, Brusselle GG, Crapo JD, de Jong K, DeMeo DL, Fingerlin TE, Gharib SA, Gulsvik A, Hall IP, Hokanson JE, Kim WJin, Lomas DA, London SJ, Meyers DA, O'Connor GT, Rennard SI, Schwartz DA, Sliwinski P, Sparrow D, Strachan DP, Tal-Singer R, Tesfaigzi Y, Vestbo J, Vonk JM, Yim J-J, Zhou X, Bossé Y, Manichaikul A, Lahousse L, Silverman EK, H Boezen M, Wain LV, Tobin MD, Hobbs BD, Cho MH
Corporate AuthorsSpiroMeta Consortium, International COPD Genetics Consortium
JournalNat Genet
Volume51
Issue3
Pagination494-505
Date Published2019 Mar
ISSN1546-1718
KeywordsAdult, Aged, asthma, Case-Control Studies, Female, Gene Expression, Genetic Loci, Genetic Predisposition to Disease, Genome-Wide Association Study, Humans, Lung, Male, Middle Aged, phenotype, Polymorphism, Single Nucleotide, Pulmonary Disease, Chronic Obstructive, Pulmonary Fibrosis, smoking
Abstract

Chronic obstructive pulmonary disease (COPD) is the leading cause of respiratory mortality worldwide. Genetic risk loci provide new insights into disease pathogenesis. We performed a genome-wide association study in 35,735 cases and 222,076 controls from the UK Biobank and additional studies from the International COPD Genetics Consortium. We identified 82 loci associated with P < 5 × 10; 47 of these were previously described in association with either COPD or population-based measures of lung function. Of the remaining 35 new loci, 13 were associated with lung function in 79,055 individuals from the SpiroMeta consortium. Using gene expression and regulation data, we identified functional enrichment of COPD risk loci in lung tissue, smooth muscle, and several lung cell types. We found 14 COPD loci shared with either asthma or pulmonary fibrosis. COPD genetic risk loci clustered into groups based on associations with quantitative imaging features and comorbidities. Our analyses provide further support for the genetic susceptibility and heterogeneity of COPD.

DOI10.1038/s41588-018-0342-2
Alternate JournalNat Genet
PubMed ID30804561
PubMed Central IDPMC6546635
Grant ListR01 HL113264 / HL / NHLBI NIH HHS / United States
MC_PC_17228 / MRC_ / Medical Research Council / United Kingdom
MR/N024842/1 / MRC_ / Medical Research Council / United Kingdom
G0700704 / MRC_ / Medical Research Council / United Kingdom
R01 HL089856 / HL / NHLBI NIH HHS / United States
P01 HL105339 / HL / NHLBI NIH HHS / United States
G1000861 / MRC_ / Medical Research Council / United Kingdom
R01 HL137927 / HL / NHLBI NIH HHS / United States
/ WT_ / Wellcome Trust / United Kingdom
R33 HL120770 / HL / NHLBI NIH HHS / United States
202849/Z/16/Z / WT_ / Wellcome Trust / United Kingdom
P01 HL132825 / HL / NHLBI NIH HHS / United States
R01 HL111024 / HL / NHLBI NIH HHS / United States
U01 HL089856 / HL / NHLBI NIH HHS / United States
R01 HL135142 / HL / NHLBI NIH HHS / United States
MC_PC_12010 / MRC_ / Medical Research Council / United Kingdom
MC_UU_00007/10 / MRC_ / Medical Research Council / United Kingdom
K08 HL136928 / HL / NHLBI NIH HHS / United States
K01 HL129039 / HL / NHLBI NIH HHS / United States
T32 HL007085 / HL / NHLBI NIH HHS / United States
R01 HL097163 / HL / NHLBI NIH HHS / United States
MR/S003762/1 / MRC_ / Medical Research Council / United Kingdom
MR/N011317/1 / MRC_ / Medical Research Council / United Kingdom
R01 HL084323 / HL / NHLBI NIH HHS / United States
BB/F019394/1 / BB_ / Biotechnology and Biological Sciences Research Council / United Kingdom
MC_QA137853 / MRC_ / Medical Research Council / United Kingdom
MR/K026992/1 / MRC_ / Medical Research Council / United Kingdom
MS#: 
MS322
Manuscript Full Title: 
Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.
ECI: 
Manuscript Status: 
Published and Public